a person in the record
Erik Winfree
American computer scientistborn 1969
Supervised 12 doctoral students (13 students at any level) at California Institute of Technology; doctorate at California Institute of Technology in 1998 under John J. Hopfield; Wikidata names John Hopfield and Stanislas Leibler as doctoral advisors and lists 3 doctoral students. Linked to Wikidata, ORCID, and 8 other registers.
How to read the markscited by a repository's recordstated by Wikidata or indexed by OpenAlexclaimed on an ORCID list, or inferred
Advisors1
The thesis record names John J. Hopfield; Wikidata names John Hopfield and Stanislas Leibler.
- cited by a thesis record
John J. Hopfield“Algorithmic Self-Assembly of DNA”
1998 · California Institute of Technology · doctoral
Students13
- cited by a thesis record
Andrés Ortiz-Muñoz“Combinatorics and Stochasticity for Chemical Reaction Networks”
2022 · California Institute of Technology · doctoral - cited by a thesis record
William Poole“Compilation and Inference with Chemical Reaction Networks”
2022 · California Institute of Technology · doctoral - cited by a thesis record
Robert Francis Johnson“Formal Design and Analysis for DNA Implementations of Chemical Reaction Networks”
2020 · California Institute of Technology · doctoral - cited by a thesis record
Niranjan Srinivas“Programming Chemical Kinetics: Engineering Dynamic Reaction Networks with DNA Strand Displacement”
2015 · California Institute of Technology · doctoral - cited by a thesis record
Constantine Glen Evans“Crystals that Count! Physical Principles and Experimental Investigations of DNA Tile Self-Assembly”
2014 · California Institute of Technology · doctoral - cited by a thesis record
Joseph Malcolm Schaeffer“Stochastic Simulation of the Kinetics of Multiple Interacting Nucleic Acid Strands”
2013 · California Institute of Technology · doctoral - cited by a thesis record
Elisa Franco“Analysis, Design, and in vitro Implementation of Robust Biochemical Networks”
2012 · California Institute of Technology · doctoral - cited by a thesis record
Seung Woo Shin“Compiling and Verifying DNA-Based Chemical Reaction Network Implementations”
2012 · California Institute of Technology · master's - cited by a thesis record
Rizal Fajar Hariadi“Non-Equilibrium Dynamics of DNA Nanotubes”
2011 · California Institute of Technology · doctoral - cited by a thesis record2010 · California Institute of Technology · doctoral
- cited by a thesis record
David Soloveichik“Molecules Computing: Self-Assembled Nanostructures, Molecular Automata,and Chemical Reaction Networks”
2008 · California Institute of Technology · doctoral - cited by a thesis record2007 · California Institute of Technology · doctoral
- cited by a thesis record
Rebecca Beth Schulman“The Self-Replication and Evolution of DNA Crystals”
2007 · California Institute of Technology · doctoral
Advisors on Wikidata2
From Wikidata, shown separately from the thesis records.
- stated by Wikidata
- stated by Wikidata
Students on Wikidata3
From Wikidata, shown separately from the thesis records.
- stated by Wikidata
- stated by Wikidata
- stated by Wikidata
The line above and below4 steps
The advisors of their advisors, four steps up at most, in the thesis records and on Wikidata, each kind marked; a person in both is listed once.
- 1 step up
stated by WikidataJohn Hopfieldcited by a thesis recordJohn J. Hopfieldstated by WikidataStanislas Leibler
- 2 steps up
stated by WikidataAlbert Overhauserstated by WikidataPierre-Gilles de Gennes
- 3 steps up
stated by WikidataAndré Herpinstated by WikidataCharles Kittelstated by WikidataFrancis Perrin
- 4 steps up
stated by WikidataGregory Breitstated by WikidataÉmile Borel
Below them, within 3 steps, the record reaches 15 people: 12 cited by thesis records, 3 stated by Wikidata.
Theses1
- cited by a thesis record
Algorithmic Self-Assembly of DNA
1998 · California Institute of Technology · doctoral · Computation and Neural Systems · the thesis's own page ›also named on this thesis
- cited by a thesis recordJohn D. Baldeschwielercommittee member
- cited by a thesis recordJohn N. Abelsoncommittee member
- cited by a thesis recordYaser S. Abu-Mostafacommittee member
- cited by a thesis recordLeonard M. Adlemancommittee member
- cited by a thesis recordAlan H. Barrcommittee member
- cited by a thesis recordJohn J. Hopfieldcommittee member
Education and career3
From Wikidata, shown separately from the thesis records. Each place opens its Wikidata item.
- undated
- undatedstudied
- undated
Works1
1998 · held from 1 repository · a work missing?
- cited by CaltechTHESIS's record
Algorithmic Self-Assembly of DNA
1998 · doctoral thesis · CaltechTHESIS
What their ORCID record lists
The works their own ORCID record lists, as they claim them: shown apart from the record's works, never checked or counted with them.
ORCID is asked for the list when this part is opened.
Sat beside the lineage64
committee member, not advisor
- cited by a thesis record
James Andrew Gornet“Predictive Coding for Cognitive Mapping”
committee member · 2027 · California Institute of Technology · doctoral - cited by a thesis record
Manisha Kaushik Kapasiawala“Design Considerations for Synthetic Cells”
committee member · 2026 · California Institute of Technology · doctoral - cited by a thesis record
Gabriel Luke Salmon“To see a World in a Grain of Cells: Statistical Auguries of Nonequilibrium”
committee member · 2026 · California Institute of Technology · doctoral - cited by a thesis record
Arjuna Michael Subramanian“Rewriting the Sequence and Structure Rules of Deep Protein Space”
committee member · 2026 · California Institute of Technology · doctoral - cited by a thesis record
Olivia Aoli Zou“Engineering DNA liquids Towards Macroscopic Separation of Biomolecules”
committee member · 2026 · California Institute of Technology · doctoral - cited by a thesis record
Samuel Ryan Davidson“Localized Catalytic DNA Circuits for Integrated Information Processing in Molecular Machines”
committee member · 2025 · California Institute of Technology · doctoral - cited by a thesis record
Matteo Michele Guareschi“Enriching Architectures for Biosensing and Motor-Filament Systems Through the Programmability of DNA”
committee member · 2025 · California Institute of Technology · doctoral - cited by a thesis record
Noah Evan Robinson“Construction of Long, Complex, and Diverse DNA Sequences”
committee member · 2025 · California Institute of Technology · doctoral - cited by a thesis record
Kevin Matthew Cherry“Molecular Pattern Recognition and Supervised Learning in DNA-Based Neural Networks”
committee member · 2024 · California Institute of Technology · doctoral - cited by a thesis record
Kordağ Mehmet Kiliç“On the Complexity of Neural Network Representations”
committee member · 2024 · California Institute of Technology · doctoral - cited by a thesis record
Jining Huang“Applications of Dynamic Nucleic Acid Nanotechnology in Closed-Loop Genetic Circuits and Detection of Viral Pathogens”
committee member · 2023 · California Institute of Technology · doctoral - cited by a thesis record
Guruprasad Raghavan“Engineering Artificial Systems with Natural Intelligence”
committee member · 2023 · California Institute of Technology · doctoral - cited by a thesis record
Samuel Eric Clamons“Three Problems in the Design and Specification of Biomolecular Circuits”
committee member · 2022 · California Institute of Technology · doctoral - cited by a thesis record
Mark Evan Fornace“Computational Methods for Simulating and Parameterizing Nucleic Acid Secondary Structure Thermodynamics and Kinetics”
committee member · 2022 · California Institute of Technology · doctoral - cited by a thesis record
Vahe Galstyan“Studies in Physical Biology: Exploring Allosteric Regulation, Enzymatic Error Correction, and Cytoskeletal Self-Organization Using Theory and Modeling”
committee member · 2022 · California Institute of Technology · doctoral - cited by a thesis record
Andrés Ortiz-Muñoz“Combinatorics and Stochasticity for Chemical Reaction Networks”
committee member · 2022 · California Institute of Technology · doctoral - cited by a thesis record
William Poole“Compilation and Inference with Chemical Reaction Networks”
committee member · 2022 · California Institute of Technology · doctoral - cited by a thesis record
Fangzhou Xiao“Biocontrol of Biomolecular Systems: Polyhedral Constraints on Binding's Regulation of Catalysis from Biocircuits to Metabolism”
committee member · 2022 · California Institute of Technology · doctoral - cited by a thesis record
James Michael Parkin“Signal Amplification in Synthetic Bacterial Communication”
committee member · 2021 · California Institute of Technology · doctoral - cited by a thesis record
Tyler David Ross“Guiding Self-Organization in Active Matter with Spatiotemporal Boundary Conditions”
committee member · 2021 · California Institute of Technology · doctoral - cited by a thesis record
Mikhail Henning Hanewich-Hollatz“Conditional Guide RNAs: Programmable Conditional Regulation of CRISPR/Cas Function via Dynamic RNA Nanotechnology”
committee member · 2020 · California Institute of Technology · doctoral - cited by a thesis record
Robert Francis Johnson“Formal Design and Analysis for DNA Implementations of Chemical Reaction Networks”
committee member · 2020 · California Institute of Technology · doctoral - cited by a thesis record
Nicholas James Porubsky“Enhanced Algorithms for Analysis and Design of Nucleic Acid Reaction Pathways”
committee member · 2020 · California Institute of Technology · doctoral - cited by a thesis recordcommittee member · 2019 · California Institute of Technology · doctoral
- cited by a thesis record
Vipul Singhal“Modeling, Computation, and Characterization to Accelerate the Development of Synthetic Gene Circuits in Cell-Free Extracts”
committee member · 2019 · California Institute of Technology · doctoral - cited by a thesis record
Philip Fai Petersen“Engineering Molecular Self-assembly and Reconfiguration in DNA Nanostructures”
committee member · 2018 · California Institute of Technology · doctoral - cited by a thesis record
Niranjan Srinivas“Programming Chemical Kinetics: Engineering Dynamic Reaction Networks with DNA Strand Displacement”
committee member · 2015 · California Institute of Technology · doctoral - cited by a thesis record
Constantine Glen Evans“Crystals that Count! Physical Principles and Experimental Investigations of DNA Tile Self-Assembly”
committee member · 2014 · California Institute of Technology · doctoral - cited by a thesis record
Daniel Lawson III Jones“Sequence-Function Relationships in E. coli Transcriptional Regulation”
committee member · 2014 · California Institute of Technology · doctoral - cited by a thesis record
Brian Robert Wolfe“Design and Analysis of Nucleic Acid Reaction Pathways”
committee member · 2014 · California Institute of Technology · doctoral - cited by a thesis record
Fiona Adriani Chandra“Limits and Tradeoffs in the Control of Autocatalytic Systems”
committee member · 2013 · California Institute of Technology · doctoral - cited by a thesis record
Joseph Malcolm Schaeffer“Stochastic Simulation of the Kinetics of Multiple Interacting Nucleic Acid Strands”
committee member · 2013 · California Institute of Technology · doctoral - cited by a thesis recordcommittee member · 2013 · California Institute of Technology · doctoral
- cited by a thesis record
Peter Thomas Weir“Polarization-Based Navigation in Drosophila”
committee member · 2013 · California Institute of Technology · doctoral - cited by a thesis record
Sungwook Woo“Beyond Watson and Crick: Programming the Self-Assembly and Reconfiguration of DNA Nanostructures Based on Stacking Interactions”
committee member · 2013 · California Institute of Technology · doctoral - cited by a thesis recordcommittee member · 2013 · California Institute of Technology · doctoral
- cited by a thesis record
Elisa Franco“Analysis, Design, and in vitro Implementation of Robust Biochemical Networks”
committee member · 2012 · California Institute of Technology · doctoral - cited by a thesis record
Joseph H. Levine“Genetic Regulatory Circuit Dynamics: Analysis and Synthesis”
committee member · 2012 · California Institute of Technology · doctoral - cited by a thesis record
Joe Chih Yao Liang“High-Throughput Strategies for the Scalable Generation of RNA Component Functions”
committee member · 2012 · California Institute of Technology · doctoral - cited by a thesis recordcommittee member · 2012 · California Institute of Technology · doctoral
- cited by a thesis record
Robert Chess Abernathy Stetson“Interaction of Planning Regions in Cortex”
committee member · 2012 · California Institute of Technology · doctoral - cited by a thesis record
Rizal Fajar Hariadi“Non-Equilibrium Dynamics of DNA Nanotubes”
committee member · 2011 · California Institute of Technology · doctoral - cited by a thesis record
Tod Augustin Pascal“New Approaches to Accurate Predictions of Free Energies: From Proteins to Organic Nanostructures”
committee member · 2010 · California Institute of Technology · doctoral - cited by a thesis record
Kai Shen“Neural Encoding of Mixtures and Stimulus Generation in the Insect Brain”
committee member · 2010 · California Institute of Technology · doctoral - cited by a thesis record
Joseph N. Zadeh“Algorithms for Nucleic Acid Sequence Design”
committee member · 2010 · California Institute of Technology · doctoral - cited by a thesis recordcommittee member · 2010 · California Institute of Technology · doctoral
- cited by a thesis record
Justin Delgado Cohen“Programming Protein Patterns on DNA Nanostructures with Pyrrole-Imidazole Polyamides”
committee member · 2009 · California Institute of Technology · doctoral - cited by a thesis record
Robert Sidney III Cox“Transcriptional Regulation and Combinatorial Genetic Logic in Synthetic Bacterial Circuits”
committee member · 2008 · California Institute of Technology · doctoral - cited by a thesis record
Mary Julia Dunlop“Dynamics and Correlated Noise in Gene Regulation”
committee member · 2008 · California Institute of Technology · doctoral - cited by a thesis record
David Soloveichik“Molecules Computing: Self-Assembled Nanostructures, Molecular Automata,and Chemical Reaction Networks”
committee member · 2008 · California Institute of Technology · doctoral - cited by a thesis record
Ulrik Ravnsborg Beierholm“Bayesian Modeling of Sensory Cue Combinations”
committee member · 2007 · California Institute of Technology · doctoral - cited by a thesis record
Justin S. Bois“Analysis of Interacting Nucleic Acids in Dilute Solutions”
committee member · 2007 · California Institute of Technology · doctoral - cited by a thesis record
Vivek Jayaraman“Neural Circuit Dynamics and Ensemble Coding in the Locust and Fruit Fly Olfactory System”
committee member · 2007 · California Institute of Technology · doctoral - cited by a thesis recordcommittee member · 2007 · California Institute of Technology · doctoral
- cited by a thesis record
Rebecca Beth Schulman“The Self-Replication and Evolution of DNA Crystals”
committee member · 2007 · California Institute of Technology · doctoral - cited by a thesis record
Tracy Kristin Teal“Studies of the Spatial Organization of Metabolism in Shewanella oneidensis and Pseudomonas aeruginosa Biofilms”
committee member · 2007 · California Institute of Technology · doctoral - cited by a thesis record
Gestur Björn Christianson“Information Processing in the Interaural Time Difference Pathway of the Barn Owl”
committee member · 2006 · California Institute of Technology · doctoral - cited by a thesis record
David Allan Drummond“Misfolding Dominates Protein Evolution”
committee member · 2006 · California Institute of Technology · doctoral - cited by a thesis record
Stefan Mihalas“Quantitative Model of Calcium/Calmodulin- Dependent Protein Kinase II Activation”
committee member · 2006 · California Institute of Technology · doctoral - cited by a thesis record
Karl Spyros Papadantonakis“Rigorous Analog Verification of Asynchronous Circuits”
committee member · 2006 · California Institute of Technology · doctoral - cited by a thesis recordcommittee member · 2005 · California Institute of Technology · doctoral
- cited by a thesis record
Christopher Edward Hart“Inferring Genetic Regulatory Network Structure: Integrative Analysis of Genome-Scale Data”
committee member · 2005 · California Institute of Technology · doctoral - cited by a thesis recordcommittee member · 2004 · California Institute of Technology · doctoral
- cited by a thesis recordcommittee member · 2004 · California Institute of Technology · doctoral