a person in the record
Manolis Kellis
Greek-born computational biologistborn 1977
Supervised 15 doctoral students (55 students at any level) at Massachusetts Institute of Technology and Universidade Nova de Lisboa; Wikidata names Bonnie Berger and Eric Lander as doctoral advisors, lists 1 doctoral student, and names Bonnie Berger as teacher. Linked to Wikidata, ORCID, and 7 other registers.
How to read the markscited by a repository's recordstated by Wikidata or indexed by OpenAlexclaimed on an ORCID list, or inferred
Students55
- cited by a thesis record
Robert Calef“Foundation Models for Protein Phenotype Prediction”
2025 · Massachusetts Institute of Technology · master's - cited by a thesis record
Lilly Edwards“Identifying the Role of Transcription Factor RFX3 in 9PDeletion Syndrome”
2025 · Massachusetts Institute of Technology · master's - cited by a thesis record
Sophie J. Guo“scPhen: Single-Cell Phenotype Predictor for Alzheimer’s Disease”
2025 · Massachusetts Institute of Technology · master's - cited by a thesis record
Shania Mitra“Accurate Protein Function Prediction with Graph Transformer-Based Function Localization”
2025 · Massachusetts Institute of Technology · master's - cited by a thesis record
Sarah Ann Zhao“Modeling Sequence Uncertainty in Comparative Genomics with a Probabilistic DNA Representation”
2025 · Massachusetts Institute of Technology · master's - cited by a thesis record
Emma P. Tysinger“Multi-Modal Protein Function Prediction using a Joint Embedding Space from Two Graph Neural Networks”
2024 · Massachusetts Institute of Technology · master's - cited by a thesis record
Sam T. Boshar“Genomic Language Models for Protein Function and Property Prediction”
2024 · Massachusetts Institute of Technology · master's - cited by a thesis record
Stephanie Pui-kay Howe“Multi-omic Analysis of Neurodegeneration in Alzheimer’s Disease and Related Dementias”
2024 · Massachusetts Institute of Technology · master's - cited by a thesis record
McKinley Polen“Long-range Genomics Benchmark Technology and More”
2024 · Massachusetts Institute of Technology · master's - cited by a thesis record
Cassia B. Wang“Single-cell dissection of mature conventional dendritic cells in the tumor microenvironment in metastatic melanoma”
2024 · Massachusetts Institute of Technology · master's - cited by a thesis record
Binwei Yan“Using heterogeneous Graph Neural Networks(hGNN) to predict cell-cell communication”
2024 · Massachusetts Institute of Technology · master's - cited by a thesis record
Benjamin Thomas James“Correlation-based Linking of Epigenomic Regions to Target Genes in Bulk and Single Cell Epigenomic Data”
2023 · Massachusetts Institute of Technology · master's - cited by a thesis record
Assel Ismoldayeva“Statistical and Computational Methods to Dissect Ancestry-Biased Germline Effects in Lung Cancer”
2023 · Massachusetts Institute of Technology · master's - cited by a thesis record
Carles Boix“Gene-regulatory circuitry of disease risk and progression”
2022 · Massachusetts Institute of Technology · doctoral - cited by a thesis record
Ruiwen Fu“Single cell landscape of innate and adaptive immunity in metastatic melanoma treated with immunotherapy”
2022 · Massachusetts Institute of Technology · master's - cited by a thesis record
Christian Hwa“Single-cell differential splicing of Alzheimer’s Disease in 1.9 million cells across 416 individuals”
2022 · Massachusetts Institute of Technology · master's - cited by a thesis record2022 · Massachusetts Institute of Technology · master's
- cited by a thesis record
Samuel Sungil Kim“Computational methods to dissect the genetic basis of human disease”
2021 · Massachusetts Institute of Technology · doctoral - cited by a thesis record
Alvin Shi“Computational dissection and prediction of cancer immunotherapy response”
2021 · Massachusetts Institute of Technology · doctoral - cited by a thesis record
Khoi Thien Nguyen“Epigenetic determinants of cellular differentiation, transcriptional reprogramming, and human disease”
2020 · Massachusetts Institute of Technology · doctoral - cited by a thesis record
Aman Patel“StructureQTL : novel QTL to associate SNPs and neighborhood regulatory structure”
2020 · Massachusetts Institute of Technology · master's - cited by a thesis record
Sergio Sebastian Pineda“Single-cell transcriptional profiling of Huntington's disease in human and mouse models”
2020 · Massachusetts Institute of Technology · master's - cited by a thesis record
Andrew Shea“Patient clustering using electronic medical records”
2020 · Massachusetts Institute of Technology · master's - cited by a thesis record2020 · Massachusetts Institute of Technology · master's
- cited by a thesis record
Taylor Herr“Dissecting the gene-regulatory circuitry of disease-associated genetic variants”
2019 · Massachusetts Institute of Technology · master's - cited by a thesis record
Maha Shady“Identifying prognostic biomarkers for cancer using gene expression data”
2019 · Massachusetts Institute of Technology · master's - cited by a thesis record
Maxim Wolf“Evolutionary and structural signatures of protein-coding function : synonymous acceleration, read-through, and structural impact of mutations”
2019 · Massachusetts Institute of Technology · doctoral - cited by a thesis record
Isabel Chien“Natural language processing for precision clinical diagnostics and treatment”
2018 · Massachusetts Institute of Technology · master's - cited by a thesis record
Sitara C Persad“Detection of RNA structural heterogeneity : computational analysis and development of web-based tool”
2018 · Massachusetts Institute of Technology · master's - cited by a thesis record
Karthik Murugadoss“Convergence of regulatory mutations into oncogenic pathways across multiple tumor types”
2017 · Massachusetts Institute of Technology · master's - cited by a thesis record
Peter H. T. Nguyen“Fine-Mapping Tools : an interactive framework for dissecting disease-associated genetic loci with functional genomics data”
2017 · Massachusetts Institute of Technology · master's - cited by a thesis record
Abhishek Kulshreshtha Sarkar“Interpreting the role of non-coding genetic variation in human disease”
2017 · Massachusetts Institute of Technology · doctoral - cited by a thesis record
Daniel N. Sosa“Principled "convergence" non-coding rare variant association testing in complex disease”
2017 · Massachusetts Institute of Technology · master's - cited by a thesis record
Xinchen Wang“Deciphering genetic associations using genome-wide epigenomics approaches”
2017 · Massachusetts Institute of Technology · doctoral - cited by a thesis record
Robert C. Altshuler“Computational personal genomics : understanding the functional effects of sequence variation”
2016 · Massachusetts Institute of Technology · doctoral - cited by a thesis record
Soheil Feizi“On the analysis of complex networks : fundamental limits, scalable algorithms, and applications”
2016 · Massachusetts Institute of Technology · doctoral - cited by a thesis record
Michal R Grzadkowski“Inferring the properties of transcription factor regulation”
2016 · Massachusetts Institute of Technology · master's - cited by a thesis record
Thomas F. Willems“Uncovering the variability, regulatory roles and mutation rates of short tandem repeats”
2016 · Massachusetts Institute of Technology · doctoral - cited by a thesis record
Angela Yen“Computational epigenomics : gene regulation, comparative methodologies, and epigenetic patterns”
2016 · Massachusetts Institute of Technology · doctoral - cited by a thesis record
Orit Giguzinsky“Environmental and age effects on methylation changes in human brain and blood cells”
2014 · Massachusetts Institute of Technology · master's - cited by a thesis record
Hayden C Metsky“A high-resolution study of the chromatin environment around regulatory elements”
2014 · Massachusetts Institute of Technology · master's - cited by a thesis record
Yi-Chieh Wu“Computational evolutionary genomics : phylogenomic models spanning domains, genes, individuals, and species”
2014 · Massachusetts Institute of Technology · doctoral - cited by a thesis record
Iris Xu“Predicting and understanding inter-locus DNA interactions”
2014 · Massachusetts Institute of Technology · master's - cited by a thesis record
Rogério Paulo Pelaio Candeias“The Drosophila melanogaster Network Landscape Prediction and analysis of transcriptional regulatory and protein-protein interaction networks”
2014 · Universidade Nova de Lisboa · doctoral - cited by a thesis record
Nischay Kumar“Classification of genes using clustering of chromatin state segmentations in human epigenomes”
2013 · Massachusetts Institute of Technology · master's - cited by a thesis record
Pouya Kheradpour“Computational regulatory genomics : motifs, networks, and dynamics”
2012 · Massachusetts Institute of Technology · doctoral - cited by a thesis record
Michael F. Lin“Identifying protein-coding genes and synonymous constraint elements using phylogenetic codon models”
2012 · Massachusetts Institute of Technology · doctoral - cited by a thesis record
Anna Shcherbina“Short tandem repeat (STR) profile authentication via machine learning techniques”
2012 · Massachusetts Institute of Technology · master's - cited by a thesis record
Anna Maria E Ayuso“Automation of Drosophila gene expression pattern image annotation : development of web-based image annotation tool and application of machine learning methods”
2011 · Massachusetts Institute of Technology · master's - cited by a thesis record
Rachel Sealfon“Predicting enhancer regions and transcription factor binding sites in D. melanogaster”
2010 · Massachusetts Institute of Technology · master's - cited by a thesis record
Guilherme Issao Camarinha Fujiwara“A general framework for genome interpretation using evolutionary signatures”
2008 · Massachusetts Institute of Technology · master's - cited by a thesis record
Ameya Nitin Deoras“Gene identification using phylogenetic metrics with conditional random fields”
2007 · Massachusetts Institute of Technology · master's - cited by a thesis record
Marta Magdalena Luczynska“Markov chain Monte Carlo and its applications to phylogenetic tree construction”
2007 · Massachusetts Institute of Technology · master's - cited by a thesis record
Joshua A Grochow“On the structure and evolution of protein interaction networks”
2006 · Massachusetts Institute of Technology · master's - cited by a thesis record
Matthew D. Rasmussen“Probabilistic framework for genome-wide phylogeny and ortholog determination”
2006 · Massachusetts Institute of Technology · master's
Advisors on Wikidata2
From Wikidata, shown separately from the thesis records.
- stated by Wikidata
- stated by Wikidata
Students on Wikidata1
From Wikidata, shown separately from the thesis records.
- stated by Wikidata
Teachers and mentors1
Wikidata's "student of" and "student" statements: a line of training beside the lineage, never a thesis supervision and never counted with one.
- a teacher or mentor, stated by Wikidata: not a thesis supervision
The line above and below4 steps
The advisors of their advisors, four steps up at most, in the thesis records and on Wikidata, each kind marked; a person in both is listed once.
- 1 step up
stated by WikidataBonnie Bergerstated by WikidataEric Lander
- 2 steps up
stated by WikidataPeter Cameronstated by WikidataSilvio Micali
- 3 steps up
stated by WikidataManuel Blumstated by WikidataPeter M. Neumann
- 4 steps up
stated by WikidataGraham Higmanstated by WikidataMarvin Minsky
Below them, within 3 steps, the record reaches 16 people: 15 cited by thesis records, 1 stated by Wikidata.
Education and career2
From Wikidata, shown separately from the thesis records. Each place opens its Wikidata item.
- undated
- undated